PhosphoPep 2.0 Home

PhospoPep version 2.0 is a project to support systems biology signaling research by providing interactive interrogation of MS-derived phosphorylation data from 4 different organisms. Currently there is data from the fly Drosophila melanogaster, human Homo sapiens, worm Caenorhabditis elegans, and yeast Saccharomyces cerevisiae. The experimental data was collected and analyzed by the Aebersold group at the Swiss Federal Institute of Technology ETH. In Seattle, Washington USA. And the Gygi lab.

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PHOSPHOPEP.ORG HISTORY

This web site phosphopep.org was first filed on January 12, 2007. It is currently nine hundred and sixty-four weeks, twenty-seven days, fifteen hours, and fifty-seven minutes old.
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2007

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LINKS TO WEB PAGE

The CUCKOO Workgroup

The introduction of the CUCKOO Workgroup. Also called as covalent modifications, are chemical modifying processes of proteins after their translation.

GPS 3.0 - Kinase-specific Phosphorylation Site Prediction

Software was implemented in JAVA and could predict kinase-specific phosphorylation sites for 408. Recently, we released GPS 3.

mudphudder mudphudder - an mdphd medical student graduate student blog on medicine, science, health and school

Please contact your service provider for more details.

PeptideAtlas

Is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline. Your raw data to PeptideAtlas.

iGPS - Prediction of site-specific kinase-substrate relations from phosphoproteomic data

Ptacek and Snyder, 2006. Ubersax and Ferrell, 2007. The human genome encodes 518 PK genes. Ptacek and Snyder, 2006. Tan and Linding, 2009.

EKPD - Eukaryotic Protein Kinase Protein Phosphatase Database

The reversible phosphorylation of proteins is one of the most important post-translational modifications, which is involved in varieties of cellular processes and plays a critical role in activation, inactivation and regulation of proteins. Two types of enzymes, known as protein kinase.

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CONTACTS

Institute for Systems Biology

Ruedi Aebersold

1441 North 34th Street

Seattle, Washington, 98103

US

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PhosphoPep 2.0 Home

DESCRIPTION

PhospoPep version 2.0 is a project to support systems biology signaling research by providing interactive interrogation of MS-derived phosphorylation data from 4 different organisms. Currently there is data from the fly Drosophila melanogaster, human Homo sapiens, worm Caenorhabditis elegans, and yeast Saccharomyces cerevisiae. The experimental data was collected and analyzed by the Aebersold group at the Swiss Federal Institute of Technology ETH. In Seattle, Washington USA. And the Gygi lab.

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